Package: PerseusR 0.3.4

Jan Rudolph

PerseusR: Perseus R Interop

Enables the interoperability between the Perseus platform for omics data analysis (Tyanova et al. 2016) <doi:10.1038/nmeth.3901> and R. It provides the foundation for developing and running Perseus plugins implemented in R by providing all required input and output handling, including data and parameter parsing as described in Rudolph and Cox 2018 <doi:10.1101/447268>.

Authors:Jan Rudolph <[email protected]>

PerseusR_0.3.4.tar.gz
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PerseusR.pdf |PerseusR.html✨
PerseusR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/cox-labs/perseusr/issues

On CRAN:

bioinformaticsinteropmaxquantperseusproteomics

29 exports 12 stars 1.87 score 13 dependencies 1 mentions 52 scripts 223 downloads

Last updated 2 years agofrom:d15bcf4009. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:annotColsannotCols<-annotRowsannotRows<-as.ExpressionSet.matrixDataas.matrixData.ExpressionSetboolParamValuedescriptiondescription<-imputeDataimputeData<-intParamValuemainmain<-matrixDataMatrixDataCheckmultiChoiceParamValueparseParametersqualityDataqualityData<-read.perseusread.perseus.as.ExpressionSetread.perseus.as.listread.perseus.as.matrixDataread.perseus.defaultsingleChoiceParamIndsingleChoiceParamValuestringParamValuewrite.perseus

Dependencies:BiobaseBiocGenericscligluelifecyclemagrittrplyrRcpprlangstringistringrvctrsXML